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Fix lint: add samtools components to meta.yml, document new params
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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subworkflows/nf-core/bam_telomere_estimation/meta.yml

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@@ -9,6 +9,9 @@ keywords:
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- bam
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- cram
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components:
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- samtools/index
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- samtools/faidx
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- samtools/stats
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- telseq
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- telogator2
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- telomerehunter
@@ -49,6 +52,18 @@ input:
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- run_telomerehunter:
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type: boolean
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description: Enable telomerehunter content profiling
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- length_estimator:
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type: string
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description: |
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Global override for length estimation tool. If set, all samples
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use this tool regardless of per-sample data_type.
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Values: 'telseq', 'telogator2', or null.
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- sniff_read_length:
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type: boolean
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description: |
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Enable read length sniffing via samtools stats. Used to auto-detect
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short vs long reads when data_type is not provided, and to
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cross-validate explicit data_type assignments.
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output:
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- length_tsv:
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type: file

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