pysnt/pyproject.toml at main · morphonets/pysnt · GitHub

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[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "pysnt"
version = "0.0.1"
authors = [
    {name = "SNT contributors"},
]
description = "Python interface for SNT, the ImageJ framework for neuroanatomy"
readme = "README.md"
license = {text = "GPL-3.0-or-later"}
requires-python = ">=3.8"
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
]
dependencies = [
    "scyjava>=1.12.1",
    "pyimagej>=1.7.0",
    "JPype1>=1.5.0",
    "numpy>=2.3.3",
    "matplotlib>=3.10.7",
    "xarray>=2025.10.1",
]

[project.optional-dependencies]
# Enhanced display and conversion features
display = [
    "pandas>=2.3.3",
    "networkx>=3.0",
    "cairosvg>=2.8.2",
    "PyMuPDF>=1.26.3",
]
# Interactive GUI features
gui = [
    "pandasgui>=0.2.15",
    "ipykernel>=7.1.0",
    "pyobjc-core>=11.1; sys_platform == 'darwin'",
    "pyobjc-framework-cocoa>=11.1; sys_platform == 'darwin'",
]
# Optional Java auto-install support
java = [
    "install-jdk>=1.1.0",
]
# Optional OME-Zarr support
zarr = [
    "zarr>=2.10.0",
    "fsspec>=2023.1.0",
]
# All optional features
all = [
    "pandas>=2.3.3",
    "networkx>=3.0",
    "cairosvg>=2.8.2",
    "PyMuPDF>=1.26.3",
    "pandasgui>=0.2.15",
    "ipykernel>=7.1.0",
    "pyobjc-core>=11.1; sys_platform == 'darwin'",
    "pyobjc-framework-cocoa>=11.1; sys_platform == 'darwin'",
    "install-jdk>=1.1.0",
    "zarr>=2.10.0",
    "fsspec>=2023.1.0",
]
# Development dependencies
dev = [
    "pytest>=6.0",
    "pytest-cov",
    "black",
    "flake8",
    "mypy",
    "isort",
]
# Documentation dependencies
docs = [
    "sphinx>=5.0,<8.0",
    "sphinx-design",
    "myst-nb>=0.15.0,<1.4.0",
    "sphinx-copybutton",
    "pydata-sphinx-theme",
]

[project.scripts]
pysnt = "pysnt.__main__:main"

[project.urls]
Homepage = "https://github.com/morphonets/pysnt"
Repository = "https://github.com/morphonets/pysnt"
Documentation = "https://pysnt.readthedocs.io"

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools.package-dir]
"" = "src"

[tool.black]
line-length = 88
target-version = ['py38']

[tool.mypy]
python_version = "3.8"
warn_return_any = true
warn_unused_configs = true