Prefix maps do not exist

[hrshdhgd]

So far I have this list during generation of mondo.sssom.tsv

WARNING:root:ICD9CM is used in the data frame but does not exist in prefix map
WARNING:root:Orphanet is used in the data frame but does not exist in prefix map
WARNING:root:Wikidata is used in the data frame but does not exist in prefix map
WARNING:root:SCITD is used in the data frame but does not exist in prefix map
WARNING:root:DERMO is used in the data frame but does not exist in prefix map
WARNING:root:PO_GIT is used in the data frame but does not exist in prefix map
WARNING:root:MTH is used in the data frame but does not exist in prefix map
WARNING:root:MEDGEN is used in the data frame but does not exist in prefix map
WARNING:root:KUPO is used in the data frame but does not exist in prefix map
WARNING:root:Reactome is used in the data frame but does not exist in prefix map
WARNING:root:HGNC is used in the data frame but does not exist in prefix map
WARNING:root:CSP is used in the data frame but does not exist in prefix map
WARNING:root:GC_ID is used in the data frame but does not exist in prefix map
WARNING:root:SUBSET_SIREN is used in the data frame but does not exist in prefix map
WARNING:root:url is used in the data frame but does not exist in prefix map
WARNING:root:LOINC is used in the data frame but does not exist in prefix map
WARNING:root:NDFRT is used in the data frame but does not exist in prefix map
WARNING:root:IMDRF is used in the data frame but does not exist in prefix map
WARNING:root:ICDO is used in the data frame but does not exist in prefix map
WARNING:root:OMOP is used in the data frame but does not exist in prefix map
WARNING:root:MeSH is used in the data frame but does not exist in prefix map
WARNING:root:ICD9 is used in the data frame but does not exist in prefix map
WARNING:root:GARD is used in the data frame but does not exist in prefix map
WARNING:root:COHD is used in the data frame but does not exist in prefix map
WARNING:root:Fyler is used in the data frame but does not exist in prefix map
WARNING:root:ICD11 is used in the data frame but does not exist in prefix map
WARNING:root:MEDDRA is used in the data frame but does not exist in prefix map
WARNING:root:Wikipedia is used in the data frame but does not exist in prefix map
WARNING:root:GTR is used in the data frame but does not exist in prefix map
WARNING:root:CALOHA is used in the data frame but does not exist in prefix map
WARNING:root:ONCOTREE is used in the data frame but does not exist in prefix map
WARNING:root:NIFSTD is used in the data frame but does not exist in prefix map
WARNING:root:EPCC is used in the data frame but does not exist in prefix map

Is there an automated way of deducing prefix_maps @matentzn ?

[matentzn]

Do not worry about Mondo so much - for that we have the Mondo mapping pipeline which does some processing.. We care about all the other ontologies aside from Mondo. For Mondo, we just copy the SSSOM tables from the Mondo repo, nothing else.

Not sure what went wrong with prefixes though: we are using bioregistry to infer expansions, and EMAPA is among them:

https://github.com/mapping-commons/sssom-py/blob/master/sssom/sssom.external.context.jsonld#L108

Maybe you need to trace down why sssom-py does not look at these?