metadata<-set method now available for theMultiAssayExperiment
metadataargument available in theMultiAssayExperimentconstructor function- Fix bug when subsetting for unmatched samples/colnames (drop = FALSE) in constructor
- Improved
MultiAssayExperimentconstructor with renamed argument "experiments" for theExperimentListorlistinput.
updateObjectmethod now available for old instances of theMultiAssayExperiment- Users with invalid
MultiAssayExperimentsshould update and re-serialize them
dropargument now works as intended when usingListinherited objects
complete.casesmethod available for theMultiAssayExperimentclass
sampleMapcolumn names renamed to assay (prev. "assayname"), primary, and colname (prev. "assay")- New vignete available for creating
MultiAssayExperimentobjects with TCGA data
- Added informative error to
MultiAssayExperimentconstructor - Improved
showmethod display - Removed warning message when only
ExperimentListargument provided
Elistclass renamed toExperimentListExperimentListconstructor is homonymousExperimentListaccessor now calledexperimentsExperimentListreplacement method is nowexperiments<-- Updated vignettes to reflect change of names
assaymethod forRangedRaggedAssayworks on inner metadata columns now- vignette examples available for
HDF5Arraypackage - Improved outline for main vignette
assaymethod available forRangedRaggedAssayand other classes. Created to obtain raw data from certain classes (see?assay,(class),ANY-method).
- Subsetting by non-character i (#108)
PrepMultiAssayhelper function now available to aid in creating object (#122)- Vignette now building (#125)
- Preliminary assay method for RangedRaggedAssay
- superflous
subsetfunction removed sampleMapuses character vectors instead of Rle- Elist order consistent when subsetting
- mapToList preserves list order
- NEWS file is now live!
- Package now in
Bioc-devel! - More to come!
- Replacement method for
colnamesnow available for theRangedRaggedAssayclass.
- Documentation additions