hahnlab.github.io/RPGC.html at main · hahnlab/hahnlab.github.io · GitHub

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          <h3>&nbsp;</h3>
          <h3>Recombinant Population Genome Construction (RPGC)     </h3>
          <p class="text">This page describes some of the tools that can be used to construct an accurate genome assembly by sequencing a recombinant population (what we call RPGC). </p>
          <p class="text">The general outlines and constraints of the method are discussed in this <a href="Publications/Hahn_etal2014.pdf">paper</a>.</p>
          <p class="text">A manual describing the step-by-step instructions for repeating the analyses described in the above paper can be found <a href="Programs/RPGC_CMD_HISTORY_v1.pdf">here</a>.</p>
          <p class="text">A folder containing all the configuration files, python scripts, and example inputs can be found <a href="Programs/rpgc.zip">here</a>.</p>
          <p class="text">All of the simulated data used in the paper have been deposited <a href="http://www.ncbi.nlm.nih.gov/sra/SRP031655">here</a>.</p>
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