Merge branch 'main' into module-4

Author: maxrjones

00-instructors.md

@@ -10,6 +10,18 @@ oceanographic remote sensing and climate monitoring from space.
 She leads transformative initiatives in open science, cloud computing, and geospatial
 data accessibility to increase scientific participation and collaboration.
 
+## [Fernando Perez](https://fernandoperez.org/)
+
+**Faculty Director @ [Schmidt Center for Data Science and Environment, UC Berkeley](https://dse.berkeley.edu/) \
+Associate Professor @ [UC Berkeley](https://berkeley.edu)**
+
+Dr. Fernando Pérez is an Associate Professor in Statistics at UC Berkeley and scientist at LBNL.
+He builds open source tools for humans to use computers as companions in thinking and
+collaboration, mostly in the scientific Python ecosystem (IPython, Jupyter & friends).
+A computational physicist by training, his research interests include questions at the
+nexus of software and geoscience, seeking to build the computational and data ecosystem
+to tackle problems like climate change with collaborative, open, reproducible, and
+extensible scientific practices.
 
 ## [Matt Fisher](https://mfisher87.github.io)
 

docker/environment.yml

@@ -51,9 +51,9 @@ dependencies:
   - "maplibre"
 
   # Publishing
-  - "mystmd >=1.6.6"
+  - "mystmd >=1.7.0"
   - "typst"
-  - "jupyter-myst-build-proxy >=0.5.1"
+  - "jupyter-myst-build-proxy >=0.6.0"
 
   # Testing and validation
   - "ruff"

for-instructors/dogfooding.md

@@ -10,9 +10,9 @@ our users will use on the day of the workshop.
 
 You'll need to be familiar with the following processes:
 
-* [](../reference/01-starting-your-server.md)
-* [](../reference/02-stopping-your-server.md)
-* [](../reference/03-gh-auth.md)
+* [](/reference/01-starting-your-server.md)
+* [](/reference/02-stopping-your-server.md)
+* [](/reference/03-gh-auth.md)
 
 Once you've set up GitHub authentication, you can use Git normally.
 
@@ -23,7 +23,7 @@ We have installed
 [`jupyter-myst-build-proxy`](https://github.com/ryanlovett/jupyter-myst-build-proxy)
 which builds the MyST site on-demand.
 
-See [](../reference/04-using-myst.md) for instructions.
+See [](/reference/04-using-myst.md) for instructions.
 
 
 ### Tradeoffs

for-instructors/style-guide.md

@@ -129,7 +129,7 @@ Follow the [Diátaxis](https://diataxis.fr) principles for your audience!
 
 ### Vocabulary
 
-All vocabulary should be defined in the [](../reference/00-vocabulary.md) page.
+All vocabulary should be defined in the [](/reference/00-vocabulary.md) page.
 Follow the pre-existing pattern to add new terms.
 
 References should be conscious of case.

joining-late.md

@@ -0,0 +1,33 @@
+::::::{hint} Joining late? You may need to clone the workshop repository
+:class: dropdown
+
+If you're joining late, you may have missed a prior instruction to start your CryoCloud server,
+clone the workshop website and set up GitHub authentication.
+
+To start your CryoCloud server, visit the reference section [](/reference/01-starting-your-server.md).
+
+To clone the workshop repository, open a terminal in your CryoCloud JupyterLab server:
+
+```bash
+cd  # Move to your home directory
+git clone https://github.com/geojupyter/workshop-open-source-geospatial.git
+```
+
+:::{youShouldNotice}
+...this command produces output like:
+
+```
+Cloning into 'workshop-open-source-geospatial'...
+remote: Enumerating objects: 417, done.
+remote: Counting objects: 100% (178/178), done.
+remote: Compressing objects: 100% (101/101), done.
+remote: Total 417 (delta 136), reused 97 (delta 77), pack-reused 239 (from 2)
+Receiving objects: 100% (417/417), 1.13 MiB | 7.21 MiB/s, done.
+Resolving deltas: 100% (229/229), done.
+```
+:::
+
+**Finally, you'll need to setup GitHub authentication to push to GitHub**, which is required to
+complete some modules (e.g. module 5).
+Please follow the instructions at [](/reference/03-gh-auth.md).
+::::::

modules/05-sharing-and-publishing/index.md

@@ -106,7 +106,7 @@ instance with MyST pre-installed.
 CryoCloud also comes with a special configuration for building a MyST site without the
 use of the terminal.
 
-To preview a MyST site in JupyterLab, view instructions in the reference section [](../../reference/04-using-myst.md).
+To preview a MyST site in JupyterLab, view instructions in the reference section [](/reference/04-using-myst.md).
 
 :::{note} The normal way (without JupyterLab)
 :class: dropdown
@@ -137,40 +137,9 @@ This workshop's materials are built with MyST.
 We'll build this premade website together on CryoCloud so you can get used to the
 process.
 
-::::::{hint} Joining late? You may need to clone the workshop repository
-:class: dropdown
-
-If you're joining late, you may have missed a prior instruction to start your CryoCloud server,
-clone the workshop website and set up GitHub authentication.
-
-To start your CryoCloud server, visit the reference section [](../../reference/01-starting-your-server.md).
-
-To clone the workshop repository, open a terminal in your CryoCloud JupyterLab server:
-
-```bash
-cd  # Move to your home directory
-git clone https://github.com/geojupyter/workshop-open-source-geospatial.git
-```
-
-:::{youShouldNotice}
-...this command produces output like:
-
-```
-Cloning into 'workshop-open-source-geospatial'...
-remote: Enumerating objects: 417, done.
-remote: Counting objects: 100% (178/178), done.
-remote: Compressing objects: 100% (101/101), done.
-remote: Total 417 (delta 136), reused 97 (delta 77), pack-reused 239 (from 2)
-Receiving objects: 100% (417/417), 1.13 MiB | 7.21 MiB/s, done.
-Resolving deltas: 100% (229/229), done.
-```
+:::{include} /joining-late.md
 :::
 
-**Finally, you'll need to setup GitHub authentication to push to GitHub**, which is required to
-complete this module.
-Please follow the instructions at [](../../reference/03-gh-auth.md).
-::::::
-
 
 #### Navigate to the correct directory in the file browser
 

modules/06-geojupyter/.gitignore

@@ -0,0 +1,2 @@
+data/*
+*.jGIS