EEGDash/pyproject.toml at develop · eegdash/EEGDash · GitHub

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[build-system]
requires = ["setuptools>=64", "wheel"]
build-backend = "setuptools.build_meta"

[project]
dynamic = ["version"]
name = "eegdash"
authors = [
  { name = "Young Truong",    email = "dt.young112@gmail.com" },
  { name = "Arnaud Delorme",  email = "adelorme@ucsd.edu" },
  { name = "Aviv Dotan",  email = "avivdot@bgu.post.ac.il" },
  { name = "Oren Shriki",  email = "shrikio@bgu.ac.il" },
  { name = "Bruno Aristimunha", email = "b.aristimunha@gmail.com"}
]
description     = "EEG data for machine learning"
readme          = "README.md"
license         = "BSD-3-Clause"
requires-python = ">=3.11"

classifiers = [
    "Operating System :: OS Independent",
    "Intended Audience :: Science/Research",
    "Intended Audience :: Developers",
    "Programming Language :: Python",
    "Topic :: Software Development",
    "Topic :: Scientific/Engineering",
    "Development Status :: 3 - Alpha",
    "Operating System :: Microsoft :: Windows",
    "Operating System :: POSIX",
    "Operating System :: Unix",
    "Operating System :: MacOS",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
]

dependencies = [
  "braindecode[hub]>=1.3.2",
  "mne",  # Source overridden in [tool.uv.sources]
  "mne_bids>=0.18.0",
  "numba",
  "requests>=2.25.0",
  "s3fs",
  "tqdm",
  "pymatreader",
  "eeglabio",
  "tabulate",
  "rich",
  "pyarrow",
  "pandas>=2.0,<2.2",  # Pin <2.2 due to wfdb ArrowStringArray compatibility
  "pydantic",
]

[tool.uv]
override-dependencies = [
  "mne>=0.0.0",  # Override braindecode's mne>=1.11.0 constraint
  "mne-bids>=0.0.0",  # Override version constraint for git source
]

[tool.uv.sources]
# Solve this when we release a new version of braindecode and mne-python
braindecode = { git = "https://github.com/braindecode/braindecode.git", branch = "master" }
mne = { git = "https://github.com/mne-tools/mne-python.git", branch = "main" }
mne_bids = { git = "https://github.com/bruAristimunha/mne-bids.git", branch = "fix-coordenation" }

[project.urls]
Homepage = "https://github.com/sccn/EEG-Dash-Data"
Issues   = "https://github.com/sccn/EEG-Dash-Data/issues"


[project.optional-dependencies]
tests = [
    'pytest',
    'pytest-cov',
    'pytest-sugar',
    'codecov',
    'pytest_cases',
    'pytest-benchmark',
    'pytest-xdist',
]
dev = [
  "pre-commit",
  "ipykernel",
  "lightning>=2.0",
  "torchmetrics>=0.7",
  "scikit-learn",
  "tensorboard"
]

docs = [
  "sphinx",
  "sphinx_design",
  "sphinx_gallery",
  "sphinx_rtd_theme",
  "pydata-sphinx-theme",
  "sphinx-autobuild",
  "sphinx-copybutton",
  "sphinx-sitemap",
  "numpydoc",
  "memory_profiler",
  "ipython",
  "lightgbm",
  "plotly",
  "nbformat",
  "graphviz",
  "neato",
  "moabb", # remove when all the moabb datasets are digested
]

digestion = [
  "pybids",
  "gql[requests]",
  "requests_toolbelt",
  "beautifulsoup4",
  "python-dotenv",
  "selenium",
  "httpx",
  "tenacity",
  "hishel",
  "pydantic>=2",
  "PyGithub>=2",
]

all = [
  "eegdash[docs]",
  "eegdash[dev]",
  "eegdash[tests]",
  "eegdash[digestion]",
]

[tool.setuptools]
py-modules = []
include-package-data = true

[tool.setuptools.dynamic]
version = {attr = "eegdash.__version__"}

[tool.setuptools.packages.find]
where      = ["."]
include    = ["eegdash*"]
exclude    = []
namespaces = false

[tool.setuptools.package-data]
"eegdash" = ["dataset_summary.csv"]
"eegdash.dataset" = ["dataset_summary.csv"]

[tool.ruff]
line-length = 88
target-version = "py311"

[tool.ruff.lint]
ignore-init-module-imports = true
select = ["E", "W", "F", "D", "I", "NPY201"]
ignore = ["E402", "E501", "D100", "D101", "D102", "D103", "D104", "D105", "D107", "D205", "D400", "D415", "D417", "F403", "D401", "E741", "E722", "D419"]

[tool.ruff.lint.per-file-ignores]
"examples/*" = ["I"]

[tool.ruff.lint.isort]
known-first-party = ["eegdash", "braindecode"]
section-order = ["future", "standard-library", "third-party", "first-party", "local-folder"]

[tool.pytest.ini_options]
testpaths        = ["tests"]
python_files     = ["test_*.py", "*_test.py"]
python_functions = ["test_*"]
markers = [
    "slow: marks tests as slow (deselect with '-m \"not slow\"')",
    "benchmark: marks tests as benchmarks (run with '--benchmark-enable')",
]
addopts = "-m 'not slow and not benchmark' -ra --durations=10"