question

[Xugh1]

Hello!
Will the default parameters of metaphlan4 automatically annotate eukaryotes and viruses? Do we still need to add additional parameters to annotate these?

[github-actions]

Thank you for creating this issue.
We currently field issues through our bioBakery Discourse Support Forum.
If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.