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performance.md

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# VFBquery Performance Test Results
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**Test Date:** 2026-01-27 18:34:25 UTC
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**Git Commit:** 79bb56c458f0839f33adf6e7a637e2bb927ffc80
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**Test Date:** 2026-01-27 21:09:57 UTC
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**Git Commit:** bc6a9d7a030d870d1a12ebd68d6218f560fd8163
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**Branch:** main
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**Workflow Run:** [21409343171](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21409343171)
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**Workflow Run:** [21414252988](https://github.com/VirtualFlyBrain/VFBquery/actions/runs/21414252988)
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## Test Overview
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@@ -116,7 +116,7 @@ test_14_publication_transgene_queries (src.test.test_query_performance.QueryPerf
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Test publication and transgene queries ... ok
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----------------------------------------------------------------------
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Ran 15 tests in 56.387s
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Ran 15 tests in 49.815s
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OK
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VFBquery functions patched with caching support
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================================================================================
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TERM INFO QUERIES
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================================================================================
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get_term_info (mushroom body): 2.3866s
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get_term_info (individual): 2.4151s
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get_term_info (mushroom body): 1.8017s
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get_term_info (individual): 2.1590s
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================================================================================
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NEURON PART OVERLAP QUERIES
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================================================================================
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NeuronsPartHere: 2.3345s
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NeuronsPartHere: 1.8172s
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================================================================================
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SYNAPTIC TERMINAL QUERIES
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================================================================================
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NeuronsSynaptic: 2.1678s
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NeuronsPresynapticHere: 1.8441s
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NeuronsPostsynapticHere: 2.0998s
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NeuronNeuronConnectivity: 1.9843s
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NeuronsSynaptic: 2.1902s
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NeuronsPresynapticHere: 1.4688s
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NeuronsPostsynapticHere: 2.1161s
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NeuronNeuronConnectivity: 1.3306s
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================================================================================
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ANATOMICAL HIERARCHY QUERIES
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================================================================================
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ComponentsOf: 1.8003s
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PartsOf: 1.8523s
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SubclassesOf: 1.8281s
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ComponentsOf: 1.5110s
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PartsOf: 1.3041s
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SubclassesOf: 1.3112s
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================================================================================
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TRACT/NERVE AND LINEAGE QUERIES
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================================================================================
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NeuronClassesFasciculatingHere: 1.8296s
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TractsNervesInnervatingHere: 1.7945s
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LineageClonesIn: 1.8121s
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NeuronClassesFasciculatingHere: 1.4739s
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TractsNervesInnervatingHere: 1.3211s
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LineageClonesIn: 1.2173s
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================================================================================
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IMAGE AND DEVELOPMENTAL QUERIES
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================================================================================
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ImagesNeurons: 1.8419s
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ImagesThatDevelopFrom: 1.7726s
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epFrag: 1.7836s
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ImagesNeurons: 1.2267s
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ImagesThatDevelopFrom: 1.2391s
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epFrag: 1.2248s
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================================================================================
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INSTANCE QUERIES
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================================================================================
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ListAllAvailableImages: 1.8095s
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ListAllAvailableImages: 1.4873s
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================================================================================
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CONNECTIVITY QUERIES
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NeuronNeuronConnectivityQuery: 1.7820s
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NeuronRegionConnectivityQuery: 1.8292s
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NeuronNeuronConnectivityQuery: 1.2280s
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NeuronRegionConnectivityQuery: 1.2380s
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================================================================================
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SIMILARITY QUERIES (Neo4j NBLAST)
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================================================================================
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SimilarMorphologyTo: 1.0780s
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SimilarMorphologyTo: 0.7255s
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================================================================================
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NEURON INPUT QUERIES (Neo4j)
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================================================================================
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NeuronInputsTo: 3.4846s
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NeuronInputsTo: 5.9788s
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================================================================================
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EXPRESSION PATTERN QUERIES (Neo4j)
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ExpressionOverlapsHere: 2.2544s
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ExpressionOverlapsHere: 0.7253s
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└─ Found 3922 total expression patterns, returned 10
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================================================================================
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TRANSCRIPTOMICS QUERIES (Neo4j scRNAseq)
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================================================================================
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anatScRNAseqQuery: 0.8748s
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anatScRNAseqQuery: 0.7157s
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└─ Found 0 total clusters
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clusterExpression: 0.8330s
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clusterExpression: 0.6933s
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└─ Found 0 genes expressed
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expressionCluster: 0.7233s
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expressionCluster: 0.5116s
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└─ Found 0 clusters expressing gene
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scRNAdatasetData: 0.7389s
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scRNAdatasetData: 0.5942s
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└─ Found 0 clusters in dataset
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================================================================================
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NBLAST SIMILARITY QUERIES
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SimilarMorphologyTo: 1.1559s
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SimilarMorphologyTo: 2.6655s
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└─ Found 215 NBLAST matches, returned 10
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SimilarMorphologyToPartOf: 0.7081s
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SimilarMorphologyToPartOf: 0.5785s
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└─ Found 0 NBLASTexp matches
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SimilarMorphologyToPartOfexp: 0.7085s
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SimilarMorphologyToPartOfexp: 0.5778s
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└─ Found 0 reverse NBLASTexp matches
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SimilarMorphologyToNB: 0.6809s
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SimilarMorphologyToNB: 1.5145s
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└─ Found 15 NeuronBridge matches, returned 10
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SimilarMorphologyToNBexp: 0.6950s
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SimilarMorphologyToNBexp: 0.5027s
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└─ Found 15 NeuronBridge expression matches, returned 10
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✅ All NBLAST similarity queries completed
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================================================================================
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DATASET/TEMPLATE QUERIES
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================================================================================
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PaintedDomains: 0.7159s
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PaintedDomains: 0.6406s
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└─ Found 0 painted domains
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DatasetImages: 0.8228s
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DatasetImages: 0.5297s
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└─ Found 0 images in dataset
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AllAlignedImages: 0.6860s
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AllAlignedImages: 0.6682s
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└─ Found 0 aligned images
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AlignedDatasets: 0.8699s
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AlignedDatasets: 0.6947s
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└─ Found 0 aligned datasets
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AllDatasets: 0.9777s
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AllDatasets: 1.6913s
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└─ Found 116 total datasets, returned 20
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✅ All dataset/template queries completed
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================================================================================
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PUBLICATION/TRANSGENE QUERIES
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TermsForPub: 0.6524s
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TermsForPub: 0.5484s
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└─ Found 0 terms for publication
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TransgeneExpressionHere: 0.7556s
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TransgeneExpressionHere: 0.5889s
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└─ Found 2346 transgene expressions, returned 10
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✅ All publication/transgene queries completed
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Performance test for specific term info queries. ... ok
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----------------------------------------------------------------------
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Ran 1 test in 3.704s
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Ran 1 test in 5.876s
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OK
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VFBquery functions patched with caching support
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==================================================
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Performance Test Results:
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==================================================
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FBbt_00003748 query took: 1.7962 seconds
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VFB_00101567 query took: 1.9079 seconds
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Total time for both queries: 3.7041 seconds
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FBbt_00003748 query took: 4.6370 seconds
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VFB_00101567 query took: 1.2390 seconds
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Total time for both queries: 5.8760 seconds
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Performance Level: 🟠 Acceptable (3-6 seconds)
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==================================================
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Performance test completed successfully!
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- [GitHub Actions History](https://github.com/VirtualFlyBrain/VFBquery/actions/workflows/performance-test.yml)
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---
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*Last updated: 2026-01-27 18:34:25 UTC*
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*Last updated: 2026-01-27 21:09:57 UTC*

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