Methylation data?

[jarbet]

Would it be possible to add functionality to depmap R package to access the DNA methylation data?

For example, I think gene-level methylation can be obtained here:

https://depmap.org/portal/data_page/?tab=allData

• CCLE_RRBS_TSS1kb_20181022.txt.gz

[lgatto]

No, as the datasets and files are pulled from figshare, and it hasn't been updated in quite some time.

The package would need an major update and only focus on the portal data. It wouldn't be difficult to code, but collecting the filenames for the different releases would be cumbersome. I won't be able to do that without some help at the moment, unfortunately.

[jarbet]

No problem. I'm planning to use your R package for most of the 'omics data and then any extra data I need I can just manually download and prepare myself. Thanks!