Fix HelpTest failures due to missing test data initialization #16

	name: CI - Build and Test

	on:
	push:
	branches: [ main, master, develop ]
	pull_request:
	branches: [ main, master, develop ]
	workflow_dispatch:

	jobs:
	build-and-test:
	name: Build and Test treebase-core
	runs-on: ubuntu-latest

	permissions:
	contents: read
	checks: write
	pull-requests: write

	services:
	postgres:
	image: postgres:12
	env:
	POSTGRES_DB: treebasedb
	POSTGRES_USER: treebase_user
	POSTGRES_PASSWORD: treebase_pass
	options: >-
	--health-cmd pg_isready
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	ports:
	- 5432:5432

	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Set up JDK 8
	uses: actions/setup-java@v4
	with:
	java-version: '8'
	distribution: 'temurin'
	cache: 'maven'

	- name: Configure database properties for tests
	run: \|
	mkdir -p /tmp/mesquite
	cat > treebase-core/src/test/resources/jdbc.properties << EOF
	jdbc.driverClassName=org.postgresql.Driver
	jdbc.url=jdbc:postgresql://localhost:5432/treebasedb
	jdbc.username=treebase_user
	jdbc.password=treebase_pass
	mesquite.folder_dir=/tmp/mesquite
	EOF

	- name: Build treebase-core
	run: mvn -B clean compile -f treebase-core/pom.xml

	- name: Run tests
	run: mvn -B test -f treebase-core/pom.xml

	- name: Publish Test Report
	uses: dorny/test-reporter@v1
	if: always()
	with:
	name: JUnit Test Results
	path: treebase-core/target/surefire-reports/*.xml
	reporter: java-junit
	fail-on-error: true

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