The LIRICAL CLI is more verbose than necessary. The user is required to provide paths to exomiser databases each time when the analysis is run with a VCF file.
To simplify the CLI, we can cache path to the local resources such as paths to Exomiser databases and data directory in a properties file next to the JAR file.
Furthermore, we can add an interactive CLI command for setting up the paths and make it part of the LIRICAL setup.
The LIRICAL CLI is more verbose than necessary. The user is required to provide paths to exomiser databases each time when the analysis is run with a VCF file.
To simplify the CLI, we can cache path to the local resources such as paths to Exomiser databases and data directory in a properties file next to the JAR file.
Furthermore, we can add an interactive CLI command for setting up the paths and make it part of the LIRICAL setup.