chore: update pre-commit hooks (#382)

* chore: update pre-commit hooks

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.13.2 → v0.14.13](astral-sh/ruff-pre-commit@v0.13.2...v0.14.13)
- [github.com/pycqa/isort: 6.0.1 → 7.0.0](PyCQA/isort@6.0.1...7.0.0)
- [github.com/pre-commit/mirrors-mypy: v1.18.2 → v1.19.1](pre-commit/mirrors-mypy@v1.18.2...v1.19.1)
- [github.com/scientific-python/cookie: 2025.05.02 → 2025.11.21](scientific-python/cookie@2025.05.02...2025.11.21)
- [github.com/numpy/numpydoc: v1.9.0 → v1.10.0](numpy/numpydoc@v1.9.0...v1.10.0)

* Align pre-commit-config and pyproject with SciTools template.

* Align pre-commit-config and pyproject with SciTools template.

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Martin Yeo <martin.yeo@metoffice.gov.uk>

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -5,7 +5,9 @@
 
 ci:
     autofix_prs: false
+    autofix_commit_msg: "style: pre-commit fixes"
     autoupdate_commit_msg: "chore: update pre-commit hooks"
+    autoupdate_schedule: "monthly"
 
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
@@ -38,9 +40,9 @@ repos:
 
 
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.13.2"
+    rev: "v0.14.13"
     hooks:
-    -   id: ruff
+    -   id: ruff-check
         types: [file, python]
         args: [--fix, --show-fixes]
     -   id: ruff-format
@@ -56,7 +58,7 @@ repos:
 
 
 -   repo: https://github.com/pycqa/isort
-    rev: '6.0.1'
+    rev: '7.0.0'
     hooks:
     -   id: isort
         name: isort (cython)
@@ -70,7 +72,7 @@ repos:
       types: [file, python]
 
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: 'v1.18.2'
+    rev: 'v1.19.1'
     hooks:
     -   id: mypy
         exclude: 'noxfile\.py|docs/conf\.py'
@@ -82,14 +84,14 @@ repos:
     - id: validate-pyproject
 
 -   repo: https://github.com/scientific-python/cookie
-    rev: 2025.05.02
+    rev: 2025.11.21
     hooks:
     - id: sp-repo-review
       additional_dependencies: ["repo-review[cli]"]
       args: ["--show=errskip"]
 
 -   repo: https://github.com/numpy/numpydoc
-    rev: v1.9.0
+    rev: v1.10.0
     hooks:
       - id: numpydoc-validation
         types: [file, python]

pyproject.toml

@@ -77,6 +77,7 @@ ignore = [
 [tool.pytest.ini_options]
 addopts = "-ra -v --doctest-modules"
 testpaths = ["src/stratify"]
+log_level = "INFO"
 
 [tool.mypy]
 disable_error_code = ["call-arg", "no-untyped-def", "no-untyped-call", "attr-defined", "misc", "index", "var-annotated", "assignment"]
@@ -254,8 +255,12 @@ convention = "numpy"
 ignore-words-list = "ND,Nd"
 
 [tool.repo-review]
-# These are a list of the currently failing tests to be fixed later:
+
 ignore = [
+    # https://learn.scientific-python.org/development/guides/packaging-simple#PP006
+    "PP006", # Uses dev dependency group
+
+    # These are a list of the currently failing tests to be fixed later:
     "PY004", # Has docs folder
     "PP302", # Sets a minimum pytest to at least 6
     "PP304", # Sets the log level in pytest