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I got this traceback when trying to use the latest version of galore:
Traceback (most recent call last):
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 52, in get_cross_sections
return get_cross_sections_scofield(energy, elements=elements)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 281, in get_cross_sections_scofield
orb: _eval_fit(energy, np_fromstr(coeffs))
~~~~~~~~~~^^^^^^^^
ValueError: The binary mode of fromstring is removed, use frombuffer instead
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/kavanase/miniconda3/bin/galore", line 8, in <module>
sys.exit(main())
~~~~^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 55, in main
run(**args)
~~~^^^^^^^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 71, in run
pdos_from_files(**kwargs)
~~~~~~~~~~~~~~~^^^^^^^^^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 85, in pdos_from_files
pdos_plotting_data = galore.process_pdos(**kwargs)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/__init__.py", line 244, in process_pdos
cross_sections = galore.get_cross_sections(weighting,
elements=pdos_data.keys())
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 64, in get_cross_sections
return get_cross_sections_json(weighting)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 142, in get_cross_sections_json
raise IOError("Cross-sections file {0} does not "
"exist!".format(path))
OSError: Cross-sections file 5 does not exist!
Traceback (most recent call last):
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 52, in get_cross_sections
return get_cross_sections_scofield(energy, elements=elements)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 281, in get_cross_sections_scofield
orb: _eval_fit(energy, np_fromstr(coeffs))
~~~~~~~~~~^^^^^^^^
ValueError: The binary mode of fromstring is removed, use frombuffer instead
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/kavanase/miniconda3/bin/galore", line 8, in <module>
sys.exit(main())
~~~~^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 55, in main
run(**args)
~~~^^^^^^^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 71, in run
pdos_from_files(**kwargs)
~~~~~~~~~~~~~~~^^^^^^^^^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 85, in pdos_from_files
pdos_plotting_data = galore.process_pdos(**kwargs)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/__init__.py", line 244, in process_pdos
cross_sections = galore.get_cross_sections(weighting,
elements=pdos_data.keys())
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 64, in get_cross_sections
return get_cross_sections_json(weighting)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 142, in get_cross_sections_json
raise IOError("Cross-sections file {0} does not "
"exist!".format(path))
OSError: Cross-sections file 5 does not exist!
Traceback (most recent call last):
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 52, in get_cross_sections
return get_cross_sections_scofield(energy, elements=elements)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 281, in get_cross_sections_scofield
orb: _eval_fit(energy, np_fromstr(coeffs))
~~~~~~~~~~^^^^^^^^
ValueError: The binary mode of fromstring is removed, use frombuffer instead
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/kavanase/miniconda3/bin/galore", line 8, in <module>
sys.exit(main())
~~~~^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 55, in main
run(**args)
~~~^^^^^^^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 71, in run
pdos_from_files(**kwargs)
~~~~~~~~~~~~~~~^^^^^^^^^^
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cli/galore.py", line 85, in pdos_from_files
pdos_plotting_data = galore.process_pdos(**kwargs)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/__init__.py", line 244, in process_pdos
cross_sections = galore.get_cross_sections(weighting,
elements=pdos_data.keys())
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 64, in get_cross_sections
return get_cross_sections_json(weighting)
File "/Users/kavanase/miniconda3/lib/python3.13/site-packages/galore/cross_sections.py", line 142, in get_cross_sections_json
raise IOError("Cross-sections file {0} does not "
"exist!".format(path))
OSError: Cross-sections file 5 does not exist!
I think it's related to the numpy version – I'm using 2.3.3. Many computational materials science packages are now based on numpy>=2.
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