Merge pull request #849 from DOI-USGS/develop

Getting ready for CRAN

Author: ldecicco-USGS

.Rbuildignore

@@ -40,6 +40,7 @@ README.Rmd
 ^codecov\.yml$
 ^\.github$
 ^\.gitlab$
+^\.quarto$
 vignettes/tutorial.Rmd
 vignettes/phosData.rds
 vignettes/waterservices.png

.github/workflows/R-CMD-check.yaml

@@ -40,7 +40,7 @@ jobs:
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-r-dependencies@96b1dc658a45175f93ed5f33fda2b2cebbb12ee8
+      - uses: r-lib/actions/setup-r-dependencies@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590
         with:
           extra-packages: |
             any::rcmdcheck

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: dataRetrieval
 Type: Package
 Title: Retrieval Functions for USGS and EPA Hydrology and Water Quality Data
-Version: 2.7.21
+Version: 2.7.22
 Authors@R: c(
     person("Laura", "DeCicco", role = c("aut","cre"),
             email = "ldecicco@usgs.gov",
@@ -25,12 +25,11 @@ Authors@R: c(
             email = "akrall@usgs.gov",
             comment=c(ORCID = "0000-0003-2521-5043")),
     person("Lee", "Stanish", role="ctb",
-            email = "lstanish@usgs.gov",
             comment=c(ORCID = "0000-0002-9775-6861")),
     person("Joeseph", "Zemmels", role="ctb",
             email = "jzemmels@usgs.gov",
             comment=c(ORCID = "0009-0008-1463-6313")),
-    person("Elise", "Hinman", role="ctb",
+    person("Elise", "Hinman", role="aut",
             email = "ehinman@usgs.gov",
             comment=c(ORCID = "0000-0001-5396-1583")),  
     person("Michael", "Mahoney", role="ctb",
@@ -67,5 +66,5 @@ Encoding: UTF-8
 BuildVignettes: true
 VignetteBuilder: knitr
 BugReports: https://github.com/DOI-USGS/dataRetrieval/issues
-RoxygenNote: 7.3.2
+RoxygenNote: 7.3.3
 Roxygen: list(markdown = TRUE)

NAMESPACE

@@ -17,6 +17,7 @@ export(create_WQP_bib)
 export(findNLDI)
 export(getWebServiceData)
 export(get_nldi_sources)
+export(get_ogc_params)
 export(importNGWMN)
 export(importRDB1)
 export(importWQP)
@@ -46,9 +47,11 @@ export(readWQPqw)
 export(readWQPsummary)
 export(read_USGS_samples)
 export(read_waterdata)
+export(read_waterdata_continuous)
 export(read_waterdata_daily)
 export(read_waterdata_field_measurements)
 export(read_waterdata_latest_continuous)
+export(read_waterdata_latest_daily)
 export(read_waterdata_metadata)
 export(read_waterdata_monitoring_location)
 export(read_waterdata_parameter_codes)

NEWS

@@ -1,3 +1,20 @@
+dataRetrieval 2.7.22
+===================
+* Added read_waterdata_latest_daily to access latest daily USGS water data.
+* Added read_waterdata_continuous to access continuous USGS water data.
+* Added state_name and hydrologic_unit_code to read_waterdata_ts_meta
+* Removed daily_id from read_waterdata_daily output since it
+is not stable over time. Moved other "id" columns to end of returned data frames.
+* Changed examples for stateCd, countyCd, and parameterCdFile. Users are
+encouraged to migrate to the "read_waterdata_metadata" functions.
+* Added no_paging argument. This will make the request more efficient, but is not 
+recommended because it will silently cut off data after 50,000 rows.
+* Removed max_results argument. Was confusing and redundant with the combination
+of no_paging and limit.
+* Increase the flexibility of read_waterdata_metadata to match other OGC functions.
+* NLDI to use agency code prefixes and should no longer be stripping the "USGS-" off the site ides.
+* Add deprecate message to readNWISuse function as data services have been retired.
+
 dataRetrieval 2.7.21
 ===================
 * Added read_waterdata_field_measurements to access new USGS water data API.

R/AAA.R

@@ -8,12 +8,20 @@ pkg.env <- new.env()
 
   services <- c("server", "daily", "time-series-metadata",
                "monitoring-locations", "latest-continuous",
-               "field-measurements")
+               "field-measurements", "latest-daily",
+               "continuous")
   collections <- c("parameter-codes", "agency-codes", "altitude-datums", "aquifer-codes",
                    "aquifer-types", "coordinate-accuracy-codes", "coordinate-datum-codes",
-                   "coordinate-method-codes", "medium-codes", 
+                   "coordinate-method-codes", "medium-codes", "counties",
+                   "hydrologic-unit-codes", "states",
                    "national-aquifer-codes", "reliability-codes", "site-types", "statistic-codes",
                    "topographic-codes", "time-zone-codes")
+  names(collections) <- c("parameter_code", "agency_code", "altitude_datum", "aquifer_code",
+                          "aquifer_type", "coordinate_accuracy_code", "coordinate_datum_code",
+                          "coordinate_method_code", "medium_code", "county",
+                          "hydrologic_unit_code", "state",
+                          "national_aquifer_code", "reliability_code", "site_types", "statistic_code",
+                          "topographic_code", "time_zone_code")
 
   pkg.env$api_endpoints <- services
   pkg.env$metadata <- collections