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lines changed Original file line number Diff line number Diff line change @@ -74,7 +74,6 @@ def main(
7474 output_dir = Path (output_dir )
7575 output_dir .mkdir (parents = True , exist_ok = True )
7676
77-
7877 # specify a normalizer
7978 percentile_normalizer = PercentileNormalizer (
8079 lower_percentile = 0.1 ,
@@ -110,9 +109,12 @@ def main(
110109 raw_skull_output_path = output_dir / f"{ modality } _skull_raw.nii.gz" ,
111110 raw_bet_output_path = output_dir / f"{ modality } _bet_raw.nii.gz" ,
112111 raw_defaced_output_path = output_dir / f"{ modality } _defaced_raw.nii.gz" ,
113- normalized_skull_output_path = output_dir / f"{ modality } _skull_normalized.nii.gz" ,
114- normalized_bet_output_path = output_dir / f"{ modality } _bet_normalized.nii.gz" ,
115- normalized_defaced_output_path = output_dir / f"{ modality } _defaced_normalized.nii.gz" ,
112+ normalized_skull_output_path = output_dir
113+ / f"{ modality } _skull_normalized.nii.gz" ,
114+ normalized_bet_output_path = output_dir
115+ / f"{ modality } _bet_normalized.nii.gz" ,
116+ normalized_defaced_output_path = output_dir
117+ / f"{ modality } _defaced_normalized.nii.gz" ,
116118 )
117119 ]
118120
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