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refactor CLI output path formatting for better readability
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brainles_preprocessing/cli.py

Lines changed: 6 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -74,7 +74,6 @@ def main(
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output_dir = Path(output_dir)
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output_dir.mkdir(parents=True, exist_ok=True)
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77-
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# specify a normalizer
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percentile_normalizer = PercentileNormalizer(
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lower_percentile=0.1,
@@ -110,9 +109,12 @@ def main(
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raw_skull_output_path=output_dir / f"{modality}_skull_raw.nii.gz",
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raw_bet_output_path=output_dir / f"{modality}_bet_raw.nii.gz",
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raw_defaced_output_path=output_dir / f"{modality}_defaced_raw.nii.gz",
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normalized_skull_output_path=output_dir / f"{modality}_skull_normalized.nii.gz",
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normalized_bet_output_path=output_dir / f"{modality}_bet_normalized.nii.gz",
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normalized_defaced_output_path=output_dir / f"{modality}_defaced_normalized.nii.gz",
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normalized_skull_output_path=output_dir
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/ f"{modality}_skull_normalized.nii.gz",
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normalized_bet_output_path=output_dir
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/ f"{modality}_bet_normalized.nii.gz",
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normalized_defaced_output_path=output_dir
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/ f"{modality}_defaced_normalized.nii.gz",
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)
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]
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