[pre-commit.ci] pre-commit autoupdate (#88)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.8.6 → v0.11.2](astral-sh/ruff-pre-commit@v0.8.6...v0.11.2)

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -33,7 +33,7 @@ repos:
 
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.8.6
+  rev: v0.11.2
   hooks:
     - id: ruff
       args: [--fix, --exit-non-zero-on-fix]

src/summarizedexperiment/BaseSE.py

@@ -58,16 +58,15 @@ def _validate_assays(assays, shape) -> tuple:
 
         if len(mat.shape) > 2:
             raise ValueError(
-                "Only 2-dimensional matrices are accepted, "
-                f"provided {len(mat.shape)} dimensions for `assay`: '{asy}'."
+                f"Only 2-dimensional matrices are accepted, provided {len(mat.shape)} dimensions for `assay`: '{asy}'."
             )
 
         if shape is None:
             shape = mat.shape
             continue
 
         if mat.shape != shape:
-            raise ValueError(f"Assay: '{asy}' must be of shape '{shape}'" f" but provided '{mat.shape}'.")
+            raise ValueError(f"Assay: '{asy}' must be of shape '{shape}' but provided '{mat.shape}'.")
 
 
 def _validate_rows(rows, names, shape):
@@ -83,8 +82,7 @@ def _validate_rows(rows, names, shape):
     if names is not None:
         if len(names) != shape[0]:
             raise ValueError(
-                f"Length of 'row_names' mismatch with number of rows. Must be '{shape[0]}'"
-                f" but provided '{len(names)}'."
+                f"Length of 'row_names' mismatch with number of rows. Must be '{shape[0]}' but provided '{len(names)}'."
             )
 
         if len(set(names)) != len(names):

src/summarizedexperiment/RangedSummarizedExperiment.py

@@ -61,9 +61,7 @@ def _access_granges(x: GRangesOrRangeSE) -> GenomicRanges:
 
 def _validate_rowranges(row_ranges, shape):
     if not (isinstance(row_ranges, (GenomicRanges, GenomicRangesList))):
-        raise TypeError(
-            "`row_ranges` must be a `GenomicRanges` or `GenomicRangesList`" f" , provided {type(row_ranges)}."
-        )
+        raise TypeError(f"`row_ranges` must be a `GenomicRanges` or `GenomicRangesList` , provided {type(row_ranges)}.")
 
     if len(row_ranges) != shape[0]:
         raise ValueError("Number of features in `row_ranges` and number of rows in assays do not match.")