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Merge pull request #222 from BackofenLab/martin-raden-patch-1
Update README.md
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README.md

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BUT: the seed-extension strategy in `--model=X` does not allow for correct `Zall` computation in exact mfe prediction mode (`--mode=M`).
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- **BEWARE in seed-extension models:** `Zall(--mode=H --model=X)` might be LARGER than exact mode `Zall(--mode=M --model=X)`, since in the latter **not all structures are counted to avoid duplicated counts!**
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- **BEWARE in seed-extension models:** `Eall(--mode=M --model=X)` might be higher than `E(--mode=M --model=X)`, since in this mode **`Zall` does not consider all structures to avoid duplicated counts!** Thus, avoid `Eall` or `Zall` output in this mode!
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Thus, most accurate results are computed using
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```

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