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NAMESPACE
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36 lines (35 loc) · 1021 Bytes
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# Generated by roxygen2: do not edit by hand
export(CalcuZtpm)
export(SegNormRDES)
export(calcTPMsFromBAMs)
export(mapTxtoLine)
export(prepareBed)
export(prepareTPMData)
import(data.table)
importFrom(Biostrings,getSeq)
importFrom(Biostrings,letterFrequency)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(IRanges,IRanges)
importFrom(Matrix,rowMeans)
importFrom(Rsamtools,scanFa)
importFrom(Rsubread,featureCounts)
importFrom(S4Vectors,end)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,start)
importFrom(S4Vectors,subjectHits)
importFrom(SLMSeg,HSLM)
importFrom(base,split)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setnames)
importFrom(data.table,split)
importFrom(dplyr,bind_cols)
importFrom(matrixStats,rowSds)
importFrom(pbmcapply,pbmclapply)
importFrom(utils,read.csv)
importFrom(utils,write.table)