Add benchamrk.json

Author: M-Jafarkhani

benchmarks/notebooks/RoCrate.ipynb

@@ -2,9 +2,28 @@
   "cells": [
     {
       "cell_type": "code",
-      "execution_count": null,
+      "execution_count": 1,
       "metadata": {},
-      "outputs": [],
+      "outputs": [
+        {
+          "name": "stdout",
+          "output_type": "stream",
+          "text": [
+            "Requirement already satisfied: rohub in /opt/anaconda3/lib/python3.12/site-packages (1.2.1)\n",
+            "Requirement already satisfied: requests in /opt/anaconda3/lib/python3.12/site-packages (from rohub) (2.32.5)\n",
+            "Requirement already satisfied: pandas in /opt/anaconda3/lib/python3.12/site-packages (from rohub) (2.2.2)\n",
+            "Requirement already satisfied: numpy>=1.26.0 in /opt/anaconda3/lib/python3.12/site-packages (from pandas->rohub) (1.26.4)\n",
+            "Requirement already satisfied: python-dateutil>=2.8.2 in /opt/anaconda3/lib/python3.12/site-packages (from pandas->rohub) (2.9.0.post0)\n",
+            "Requirement already satisfied: pytz>=2020.1 in /opt/anaconda3/lib/python3.12/site-packages (from pandas->rohub) (2024.1)\n",
+            "Requirement already satisfied: tzdata>=2022.7 in /opt/anaconda3/lib/python3.12/site-packages (from pandas->rohub) (2023.3)\n",
+            "Requirement already satisfied: charset_normalizer<4,>=2 in /opt/anaconda3/lib/python3.12/site-packages (from requests->rohub) (3.4.4)\n",
+            "Requirement already satisfied: idna<4,>=2.5 in /opt/anaconda3/lib/python3.12/site-packages (from requests->rohub) (3.11)\n",
+            "Requirement already satisfied: urllib3<3,>=1.21.1 in /opt/anaconda3/lib/python3.12/site-packages (from requests->rohub) (2.6.3)\n",
+            "Requirement already satisfied: certifi>=2017.4.17 in /opt/anaconda3/lib/python3.12/site-packages (from requests->rohub) (2026.1.4)\n",
+            "Requirement already satisfied: six>=1.5 in /opt/anaconda3/lib/python3.12/site-packages (from python-dateutil>=2.8.2->pandas->rohub) (1.17.0)\n"
+          ]
+        }
+      ],
       "source": [
         "!pip install rohub"
       ]
@@ -44,12 +63,12 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 4,
+      "execution_count": 11,
       "metadata": {},
       "outputs": [],
       "source": [
         "if USE_DEVELOPMENT_VERSION:\n",
-        "    rohub.settings.API_URL = \"ttps://rohub2020-devel.apps.bst2.paas.psnc.pl/api/\"\n",
+        "    rohub.settings.API_URL = \"https://rohub2020-devel.apps.bst2.paas.psnc.pl/api/\"\n",
         "    rohub.settings.KEYCLOAK_CLIENT_ID = \"rohub2020-cli\"\n",
         "    rohub.settings.KEYCLOAK_CLIENT_SECRET = \"714617a7-87bc-4a88-8682-5f9c2f60337d\"\n",
         "    rohub.settings.KEYCLOAK_URL = \"https://keycloak-dev.apps.paas-dev.psnc.pl/auth/realms/rohub/protocol/openid-connect/token\"\n",
@@ -73,6 +92,37 @@
         "rohub.login(username=username, password=password)"
       ]
     },
+    {
+      "cell_type": "code",
+      "execution_count": 14,
+      "metadata": {},
+      "outputs": [
+        {
+          "name": "stdout",
+          "output_type": "stream",
+          "text": [
+            "Trying to confirm status of the job. It can take a while...\n"
+          ]
+        },
+        {
+          "ename": "SystemExit",
+          "evalue": "Job failed with the following info: The job failed with errors: Archive /tmp/tmpexlqglgj.zip contains duplicated RO crate manifest.",
+          "output_type": "error",
+          "traceback": [
+            "An exception has occurred, use %tb to see the full traceback.\n",
+            "\u001b[0;31mSystemExit\u001b[0m\u001b[0;31m:\u001b[0m Job failed with the following info: The job failed with errors: Archive /tmp/tmpexlqglgj.zip contains duplicated RO crate manifest.\n"
+          ]
+        }
+      ],
+      "source": [
+        "research_areas  = [\"Environmental research\"]\n",
+        "title  =  \"Merged RoCrates\"\n",
+        "description  =  f\"Description for {title}\"\n",
+        "zip_path = \"/Users/mahdi/Documents/GitHub/NFDI4IngModelValidationPlatform/examples/linear-elastic-plate-with-hole/RoCrates/Merged.zip\"\n",
+        "RO  =  rohub.ros_upload(path_to_zip=zip_path)\n",
+        "print(f\"Identifier: {RO.identifier}\")"
+      ]
+    },
     {
       "cell_type": "code",
       "execution_count": 6,