Updated workflows with latest actions, test on Python 3.14 and mac.

Also greatly simplify wheel building to just rebuild all of the dependencies
for each architecture rather than using pre-built binaries.

Author: LTLA

.github/workflows/build-docs.yml

@@ -14,31 +14,33 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Set up python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
-          python-version: 3.12
+          python-version: 3.14
           cache: 'pip'
 
-      - name: Set up HDF5
+      - name: Get latest CMake
+        uses: lukka/get-cmake@latest
+
+      - name: Cache installed
+        uses: actions/cache@v4
+        with:
+          path: installed
+          key: installed-${{ matrix.os }}-${{ matrix.python-version }}
+
+      - name: Set up dependencies
         run: |
-          sudo apt-get update
-          sudo apt-get install libhdf5-dev
+            python -m pip install setuptools
+            python -c "import setup; setup.build_zlib(None); setup.build_libaec(None); setup.build_hdf5(None);"
 
-      - name: Install Python dependencies
+      - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip setuptools
-          pip install cmake pybind11 numpy assorthead tox
-          DEPENDENCIES=$(python -c 'from setuptools.config.setupcfg import read_configuration as c; a = c("setup.cfg"); print(" ".join(a["options"]["install_requires"][1:]))')
-          pip install ${DEPENDENCIES}
-          DOCDEPENDENCIES=$(python -c 'with open("docs/requirements.txt") as a: available = list(a); print(" ".join(map(lambda x : x.strip(), filter(lambda x : not x.startswith("#"), available))))')
-          pip install ${DOCDEPENDENCIES}
+          python -m pip install --upgrade pip
+          pip install flake8 pytest tox
 
       - name: Build docs
         run: |
-          python setup.py build_ext --inplace
-          cp build/lib*/dolomite_base/lib_dolomite* src/dolomite_base/
           tox -e docs
-          touch ./docs/_build/html/.nojekyll
 
       - name: GH Pages Deployment
         if: github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/tags/')

.github/workflows/publish-pypi.yml

@@ -4,139 +4,31 @@ on:
   push:
     tags:
       - "*"
-  pull_request:
 
 jobs:
-  build_linux_x86_64:
-    name: Build wheels for linux x86_64
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v4
-
-      - name: Build wheels
-        uses: pypa/cibuildwheel@v2.22.0
-        env:
-          CIBW_ARCHS: x86_64
-          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
-          CIBW_MANYLINUX_X86_64_IMAGE: ghcr.io/artifactdb/prebuilt-hdf5/manylinux_x86_64:0.1.1
-          CIBW_MUSLLINUX_X86_64_IMAGE: ghcr.io/artifactdb/prebuilt-hdf5/musllinux_x86_64:0.1.1
-          CIBW_SKIP: pp*
-
-      - uses: actions/upload-artifact@v4
-        with:
-          name: cibw-wheels-ubuntu-x86_64
-          path: ./wheelhouse/*.whl
-
-  build_linux_x86_64_legacy:
-    name: Build wheels for linux x86_64
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v4
-
-      - name: Build wheels
-        uses: pypa/cibuildwheel@v2.22.0
-        env:
-          CIBW_ARCHS: x86_64
-          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
-          CIBW_MANYLINUX_X86_64_IMAGE: ghcr.io/artifactdb/prebuilt-hdf5/manylinux_x86_64_legacy:0.1.2
-          CIBW_BUILD: "*-manylinux_*"
-          CIBW_SKIP: pp*
+  build_wheels:
+    name: Build wheels
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: ["ubuntu-latest", "macos-latest"]
+        python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
 
-      - uses: actions/upload-artifact@v4
-        with:
-          name: cibw-wheels-ubuntu-x86_64_legacy
-          path: ./wheelhouse/*.whl
-
-  build_macosx_x86_64:
-    name: Build wheels for macosx x86_64
-    runs-on: macos-13
     steps:
       - name: Check out repository
         uses: actions/checkout@v4
 
-      - name: Grab prebuilt dependencies
-        run: |
-            curl -L https://github.com/ArtifactDB/prebuilt-hdf5/releases/download/0.1.1/macosx_x86_64.tar.gz > bundle.tar.gz
-            tar -xvf bundle.tar.gz
-
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.22.0
+        uses: pypa/cibuildwheel@v3.3.0
         env:
-          CIBW_ARCHS: x86_64
-          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
-          CIBW_ENVIRONMENT: "MORE_CMAKE_OPTIONS=\"-DCMAKE_INSTALL_PREFIX=$(pwd)/installed -DCMAKE_OSX_ARCHITECTURES=x86_64\""
-          CIBW_BUILD_VERBOSITY: 3
+          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.10"
           CIBW_SKIP: pp*
-          MACOSX_DEPLOYMENT_TARGET: 13.7
 
       - uses: actions/upload-artifact@v4
         with:
-          name: cibw-wheels-macos-x86_64
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
           path: ./wheelhouse/*.whl
 
-  build_macosx_arm64:
-    name: Build wheels for macosx arm64
-    runs-on: macos-14
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v4
-
-      - name: Grab prebuilt dependencies
-        run: |
-            curl -L https://github.com/ArtifactDB/prebuilt-hdf5/releases/download/0.1.1/macosx_arm64.tar.gz > bundle.tar.gz
-            tar -xvf bundle.tar.gz
-
-      - name: Build wheels
-        uses: pypa/cibuildwheel@v2.22.0
-        env:
-          CIBW_ARCHS: arm64
-          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
-          CIBW_ENVIRONMENT: "MORE_CMAKE_OPTIONS=\"-DCMAKE_INSTALL_PREFIX=$(pwd)/installed -DCMAKE_OSX_ARCHITECTURES=arm64\""
-          CIBW_BUILD_VERBOSITY: 3
-          CIBW_SKIP: pp*
-          MACOSX_DEPLOYMENT_TARGET: 14.0
-
-      - uses: actions/upload-artifact@v4
-        with:
-          name: cibw-wheels-maxos_arm64
-          path: ./wheelhouse/*.whl
-
-#  build_windows_x86_64:
-#    name: Build wheels for windows x86_64
-#    runs-on: windows-2019
-#    steps:
-#      - name: Check out repository
-#        uses: actions/checkout@v4
-#
-#      - name: Grab prebuilt dependencies
-#        run: |
-#            curl -L https://github.com/ArtifactDB/prebuilt-hdf5/releases/download/0.0.4/windows_x86_64.tar.gz > bundle.tar.gz
-#            tar -xvf bundle.tar.gz
-#        shell: bash
-#
-#      - name: Store path
-#        run: |
-#            $wd = pwd
-#            echo "INSTALL_DIR=$wd\\installed" >> $env:GITHUB_ENV
-#        shell: powershell
-#
-#      - name: Build wheels
-#        uses: pypa/cibuildwheel@v2.22.0
-#        env:
-#          CIBW_ARCHS: AMD64
-#          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.9"
-#          CIBW_ENVIRONMENT: "MORE_CMAKE_OPTIONS=\"-DCMAKE_INSTALL_PREFIX=${INSTALL_DIR}\" VERBOSE=1"
-#          CIBW_BEFORE_BUILD_WINDOWS: "pip install delvewheel"
-#          CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: "delvewheel repair -w {dest_dir} {wheel}"
-#          CIBW_TEST_EXTRAS: "testing"
-#          CIBW_TEST_COMMAND: "pytest {package}/tests"
-#          CIBW_BUILD_VERBOSITY: 3
-      # - uses: actions/upload-artifact@v3
-      #   with:
-      #     path: ./wheelhouse/*.whl
-
   build_sdist:
     name: Build source distribution
     runs-on: ubuntu-latest
@@ -154,17 +46,16 @@ jobs:
           path: dist/*.tar.gz
 
   upload_pypi:
-    if: startsWith(github.ref, 'refs/tags/')
-    needs: [build_linux_x86_64, build_linux_x86_64_legacy, build_macosx_x86_64, build_macosx_arm64, build_sdist]
+    needs: [build_wheels, build_sdist]
     runs-on: ubuntu-latest
+    permissions:
+      id-token: write # need this for OIDC
+
     steps:
       - uses: actions/download-artifact@v4
         with:
           pattern: cibw-*
           path: dist
           merge-multiple: true
 
-      - uses: pypa/gh-action-pypi-publish@v1.12.2
-        with:
-          user: __token__
-          password: ${{ secrets.PYPI_PASSWORD }}
+      - uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/run-tests.yml

@@ -8,17 +8,18 @@ on:
 
 jobs:
   test:
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+        os: ["ubuntu-latest", "macos-latest"]
+        python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
 
     name: Python ${{ matrix.python-version }}
     steps:
       - uses: actions/checkout@v4
 
       - name: Setup Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
           python-version: ${{ matrix.python-version }}
           cache: "pip"
@@ -30,12 +31,12 @@ jobs:
         uses: actions/cache@v4
         with:
           path: installed
-          key: installed-${{ matrix.python-version }}
+          key: installed-${{ matrix.os }}-${{ matrix.python-version }}
 
       - name: Set up dependencies
         run: |
             python -m pip install setuptools
-            python -c "import setup; setup.build_libaec(None); setup.build_hdf5(None);"
+            python -c "import setup; setup.build_zlib(None); setup.build_libaec(None); setup.build_hdf5(None);"
 
       - name: Test with tox
         run: |